See here:
http://www.publications.parliament.uk/pa/bills/lbill/2012-2013/0056/lbill_2012-20130056_en_2.htm#pt2-pb1-l1g6
So this is the version which includes some improvements to the ways in which secret courts can be applied for. However the amendments do not kill off secret courts or Part II of the Bill altogether, and therefore fall well short of the motion at the Liberal Democrats autumn Conference this year.